Package: CCM 1.2
CCM: Correlation Classification Method
Classification method described in Dancik et al (2011) <doi:10.1158/0008-5472.CAN-11-2427> that classifies a sample according to the class with the maximum mean (or any other function of) correlation between the test and training samples with known classes.
Authors:
CCM_1.2.tar.gz
CCM_1.2.zip(r-4.7-any)CCM_1.2.zip(r-4.6-any)CCM_1.2.zip(r-4.5-any)
CCM_1.2.tgz(r-4.6-any)CCM_1.2.tgz(r-4.5-any)
CCM_1.2.tar.gz(r-4.7-any)CCM_1.2.tar.gz(r-4.6-any)
CCM_1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CCM/json (API)
| # Install 'CCM' in R: |
| install.packages('CCM', repos = c('https://gdancik.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gdancik/ccm/issues
Datasets:
- data.expr - Sample gene expression and gender data
- data.gender - Sample gene expression and gender data
Last updated from:5d70cb80a0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 99 | ||
| source / vignettes | OK | 194 | ||
| linux-release | OK | 102 | ||
| macos-release | OK | 89 | ||
| macos-oldrel | OK | 76 | ||
| windows-devel | OK | 51 | ||
| windows-release | OK | 76 | ||
| windows-oldrel | OK | 49 | ||
| wasm-release | OK | 80 |
Exports:cor.by.classcreate.CCM
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Correlation classification method (CCM) | CCM-package CCM |
| Finds within class correlations | cor.by.class |
| Creates a CCM correlation matrix | create.CCM |
| Sample gene expression and gender data | data.expr |
| Sample gene expression and gender data | data.gender |
| Plot CCM correlations | plot.CCM |
| Classification from a CCM correlation matrix | predict.CCM |